Bioinformatics Pipeline Developer with Nextflow
You will be responsible for developing and maintaining robust, scalable, and reproducible data analysis pipelines using Nextflow. The final pipeline will be deployed on Tower.
ROLE RESPONSIBILITIES:
- Develop and optimize a Nextflow pipeline
- Create Docker/Singularity images
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Ensure smooth deployment on Tower, integrating:
- GitHub (code management)
- Docker registry (containerized images)
- HPC clusters (computation workhorse)
- AWS S3 (data storage)
- Integrate various tools and databases into the Nextflow workflows to streamline data processing.
- Collaborate with bioinformaticians, software engineers, and data scientists to refine workflows and ensure performance optimization.
- Write clear technical documentation for the pipeline, deployment, and usage.
OUR REQUIREMENTS:
- Strong experience in developing and maintaining workflows using Nextflow.
- Proficiency in containerization technologies (Docker/Singularity).
- Familiarity with bioinformatics, data processing and common formats.
- Hands-on experience with cloud computing (AWS, GCP, or Azure) and HPC environments.
- Version control and CI/CD experience using GitHub/GitLab.
- Scripting skills in Bash, Python, or R for bioinformatics.
- Knowledge of data storage solutions (AWS S3, object storage).
- Strong documentation and communication skills.
- Excellent problem-solving skills and the ability to work both independently and as part of a team.
- Ability to work within CET + 3h overlap with East Coast US business hours.
YOU'LL BE AN IDEAL CANDIDATE IF YOU HAVE:
- Background in Bioinformatics, Computational Biology, Software Engineering, or related fields.
- Experience working with bioinformatics pipelines
- Ability to work in a cross-functional team, collaborating with bioinformaticians and data engineers.
- Passion for automating and optimizing computational workflows for large-scale biological data analysis.
WHAT'S IN IT FOR YOU:
- Enjoy a monthly salary of 3.100 - 4.400 USD net on a B2B contract. This amount is subject to all applicable taxes, social security contributions, and other mandatory deductions according to the laws of your country of residence.
- Benefit from 26 days of paid holidays, plus the equivalent of public holidays in Poland.
- Receive 33 paid sick days per year at 80% of your salary.
- You'll have a 5% addition to your salary allocated to a Professional Development Budget for activities that help you grow.
- Embrace remote work with flexible hours tailored to your time zone and family life.
- Enjoy four paid days per year for training, conferences, events, or workshops.
- Access private health care insurance (in Poland) or a cash equivalent if you're not in Poland.
- You can receive a FitProfit or FitSport membership card (in Poland) or a cash equivalent if you're not in Poland.
- You will be covered with life insurance.
- Benefit from AskHenry, your assistant.
- Equipment: Mac or Lenovo Thinkpad.
- Flexible working hours & home office.
- Career path and personal growth support.
WHAT CAN YOU EXPECT DURING THE PROCESS:
- Recruiter interview
- Interview with the Hiring Manager
- Offer
- Department
- Tech
- Locations
- Remote / Poland, Remote/ EUROPE, Remote / LATAM
- Remote status
- Fully Remote
- Monthly salary
- $3,100 - $4,400
- Employment type
- Full-time
About Appsilon
At Appsilon, we create interactive and user-friendly applications for exploring and visualizing data, helping clients make the best decisions.
Our solutions are used by Fortune 500 and large-scale organizations worldwide to invent new drugs, save people’s lives, optimize processes, and increase revenue. We specialize in custom-made, ready-to-use solutions in R and Shiny, but we also offer versatile data science expertise and a wide range of data-related technologies
We don’t just code. We partner up with our clients to find the best solution for their business. We help with user adoption and releasing new tools in the company. We have a unique, cross-domain mix of skills, from Computer Science to Biostatistics, Genomics and Data Science. Our team consists of PhDs and industry experts.
Our clients handle vast amounts of data. Organizing and visualizing this data in a manner that enhances decision-making impact, efficiency, and speed poses a significant challenge.
Our solutions eliminate 1000s of hours of manual work for data scientists, preventing significant delays in delivering valuable insights. They are tailored to our clients needs and can be updated in real-time.
Appsilon develops its own R packages that enhance the aesthetics, dynamics, and security of R Shiny apps. These packages facilitate the development and scaling of Shiny apps for enterprise customers, enabling them to accommodate thousands of simultaneous users and function on a distributed infrastructure.
100% remote company, no physical office, ability to hire top talent worldwide.
Repeatable methodology to deliver results fast. Even in 4 weeks of production for enterprise customers.
Experience in delivering results for the largest companies in the world.
Before you apply, please read our code of conduct.
Bioinformatics Pipeline Developer with Nextflow
You will be responsible for developing and maintaining robust, scalable, and reproducible data analysis pipelines using Nextflow. The final pipeline will be deployed on Tower.
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